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The molecular mechanism of Tibetan medicine Caragana jubabt Poir in the treatment of high altitude potycythemia based on network pharmacology and molecular docking

Published on Aug. 05, 2024Total Views: 292 times Total Downloads: 129 times Download Mobile

Author: LIU Chao HAN Chunsun YU Jinshuai LI Tao CHEN Fan REN Jianwei

Affiliation: School of Medicine, Tibet University, Lhasa 850000, China

Keywords: Caragana jubabt Poir High altitude polycythemia Molecular mechanism Network pharmacology Molecular docking

DOI: 10.12173/j.issn.1004-4337.202403045

Reference: Liu C, Han CS, Yu JS, Li T, Chen F, Ren JW. The molecular mechanism of Tibetan medicine Caragana jubabt Poir in the treatment of high altitude potycythemia based on network pharmacology and molecular docking[J]. Journal of Mathematical Medicine, 2024, 37(7): 500-508. DOI: 10.12173/j.issn.1004-4337.202403045[Article in Chinese]

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Abstract

Objective  To explore the molecular mechanism of the therapeutic effect of Tibetan medicine Caragana jubabt Poir on high altitude polycythemia (HAPC) based on network pharmacology and molecular docking.

Methods  The active ingredients of Caragana jubabt Poir were identified through literature review. The SwissTargetPrediction database was used to predict its potential targets. The OMIM and GeneCards databases were used to screen for HAPC targets. The drug action targets and disease targets were intersected to construct a protein-protein interaction network. The DAVID database was used for gene function and pathway enrichment analysis, and AutoDock software was used to perform molecular docking on key active ingredients and core targets, in order to screen out potential targets of action and related signaling pathways for the active ingredients of Caragana jubabt Poir.

Results  There were 25 effective active ingredients of Caragana jubabt Poir, with 401 corresponding targets. The top 8 components with the higher connectivity were 7, 3', 4'-Trihgdroxy flavone, Geraldone, Quercetin, biochanin A, lsorhamnetin, 7, 4'-Dihydroxyflavone, Formononetin, Afrormosin.  261 HAPC targets were obtained and there was a total of 41 intersection targets between drug components and HAPC, the core targets including VEGFA, AKT1, TNF, HAP90AA1, ESR1, MMP9, ACE, F2, CYP3A4, REN; Biological process (BP), celluar components (CC), molecular function (MF) were mainly related with response to hypoxia, positive regulation of protein phorylation, cell surface, macromolecular complex, steroid binding, enzyme binding. The key signaling pathways mainly involved Pathways in cancer, Chemical carcinogenesis-receptor activation, Fluid shear stress and atherosclerosis, etc. The molecular docking results showed that the 8 main active ingredients had good binding with ACE and CYP3A4, and the binding energies were all less than -8.5 kcal·mol-1.

Conclusion  The active ingredients of Caragana jubabt Poir could act on multiple targets through multiple pathways to treat HAPC, which provides a certain scientific basis for its clinical application.

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References

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