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Construction and validation of a prognostic risk model for patients with acute myeloid leukemia based on bioinformatics

Published on Dec. 28, 2023Total Views: 1318 times Total Downloads: 602 times Download Mobile

Author: Si-Na ZHANG 1 Shu-Jie MA 2

Affiliation: 1. Institute of Sexually Transmitted Disease and AIDS Prevention and Control, Zibo Municipal Center for Disease Control and Prevention, Zibo 255020, Shandong Province, China 2. School of Medicine, Henan Polytechnic University, Jiaozuo 454003, Henan Province, China

Keywords: Acute myeloid leukemia Bioinformatics The Cancer Genome Atlas Genotype-Tissue Expression Prognostic model Random forest

DOI: 10.12173/j.issn.1004-4337.202310183

Reference: Zhang SN, Ma SJ. Construction and validation of a prognostic risk model for patients with acute myeloid leukemia based on bioinformatics[J]. Journal of Mathematical Medicine, 2023, 36(12): 888-898. DOI: 10.12173/j.issn.1004-4337.202310183[Article in Chinese]

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Abstract

Objective  To construct and validate a prognosis risk model for acute myeloid leukemia (AML) patients.

Methods  Based on The Cancer Genome Atlas (TCGA) database and Genotype-Tissue Expression (GTEx) database to obtain gene sequencing data of AML samples and normal bone marrow samples, and then perform gene differential analysis. The genes associated with AML survival were selected and a random forest model was used to construct a risk scoring model based on gene features. The biological functions of the predictive model were further explored through Gene Ontology (GO) enrichment analysis.

Results  According to the results of Kaplan-Meier analysis and receiver operating characteristic (ROC) curve analysis, the survival rate predictions demonstrated good sensitivity and specificity in both the training and testing datasets. Multivariate Cox regression analysis and stratified analysis showed that the gene prognostic risk model could independently predict the survival outcomes of patients with AML. GO enrichment analysis demonstrated that differentially expressed genes were enriched in biological processes related to known AML.

Conclusion  By using bioinformatics methods, a mRNA marker containing 5 genes (ACOT7, SFXN3, SLC29A2, HINT2, ZMAT1) has been identified, which may serve as a potential prognostic marker for AML and provide a basis for personalized risk assessment and the formulation of treatment plans for AML patients.

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References

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